Shaggy and Scooby-Doo solve mysteries with the help of new nano-technology infused Scooby Snacks, which imbue the canine hero with special skills such as the ability to fly.
Shaggy's old dog called Zoinks arrives, who has been missing. Scooby and Zoinks do not get along and it turns out the dog was created by Phibes, to split Shaggy and Scooby up. So to make them hate each other more, Phibes creates Scooby's first master Groovy Don, Zoinks and Groovy Don try to destroy Shaggy and Scooby, but end up defeated by the Dynamic Duo.
Shaggy's uncle disappears and leaves Shaggy with a billion dollars, so Shaggy and Scooby-Doo go to the mansion he left for them and start exploring. They see some of his inventions and then Shaggy sees a note about how his new invention is trying to be stolen by someone and now he must go into hiding. Now Scooby and Shaggy have to go and solve another mystery!
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